Scaffold Ga0334987_0000763

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000763
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30268
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (8.20%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025465	Metagenome	201	Y
F031032	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000763_3_254	F025465	N/A	TTYLKIKLSLEEIKEKHEHRTDLINSMERSLADLQQVKISYDAMEKELRAALQQNFRLEKLLIEEKFKNKDLEIQLKTKNYEL
Ga0334987_0000763_30003_30266	F025465	N/A	MDELTIITGKVNLDTTYLKIKLSLEEIKEKHEHRTDLINSMERSLADLQQVKISYDAMEKELRTALQQNFRLEKLLIEEKFKNKDLEI
Ga0334987_0000763_7924_8085	F031032	N/A	MNPNKHKNEWNAIKVIMQVSEINYCIFLDYEINKLEIHAVTKDEFNTYQYNSN