Scaffold Ga0334987_0000669

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000669
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32398
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (14.81%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020651	Metagenome / Metatranscriptome	222	Y
F025648	Metagenome / Metatranscriptome	200	N
F032560	Metagenome / Metatranscriptome	179	Y
F043816	Metagenome / Metatranscriptome	155	N
F054853	Metagenome	139	N
F086624	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000669_14809_14967	F043816	N/A	MKQLIELRDWVDQQCKTGQPFTCADVLNKIDEILESDDDIQELLVTSAYEME
Ga0334987_0000669_2828_3076	F054853	N/A	MSEEKQPEVSEEIEWEDAETTTRSDLISCAYYAISAVEDIDLTLVSKMEANRIKTIRRQSLDIIANVIGEMHAEIFDVNDDI
Ga0334987_0000669_4240_4452	F032560	N/A	MQETYQDLEIGMQNLLPMERQMLLAKIYHYAWYNKEAYDQLITFVDHWEKHSEFKAVFFKQDSEESTNQI
Ga0334987_0000669_4454_4666	F086624	N/A	MSEVKKENWGAWKNTTKDGKEVIKFSINGQRYNMWVNSYKDKPAQPDYKIYEDTYVAPTETKLANDDLEF
Ga0334987_0000669_5726_6469	F025648	N/A	MEIQKILTQPLQVANEWTTLQSGLIAKEDLPIIEAFKGDKLNLLSPVTLRENLAYIFTLIGLTRLPDTIELEVIEDFIRSTYPFFTIQEMRIAFKMAVQGKFDCNIEHYEKFSPKYISGIMNAYKSKANQVRKNIPPPPEQPVKQLTDQEIVDFTKDDWLNGKREDFNRVFNADKVFKILLKQGKLTFTQDQILETINVVREDNLYKLNRMHPLDAKKFSQDIKREDFIELQCKKLALVKYFESLSS
Ga0334987_0000669_8293_8967	F020651	AGG	MNIAVILLTLNRNDLTKRVIDQNFFNSGYDADCFLVDNGSDQVNFKYPFTGYDLSKTKRGIGAGVNAGLKMTRGYDGVCLLANDILLPTNWLKNWVMFAQRVSKTGIIGIHCVEELPPLVDGIHKTHVPFGNNFITRELIDTIGGYNTEYDPYGMQDRDYAERAIIAGFTNYYIPDLRSDHIGHDVGNGTDYRAMKDASLQRAQAVWEKYQPIYHTEKKLRCEF