Scaffold Ga0334987_0000567

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000567
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34415
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (75.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007305	Metagenome / Metatranscriptome	353	Y
F042870	Metagenome / Metatranscriptome	157	Y
F043902	Metagenome / Metatranscriptome	155	Y
F093303	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000567_11283_11399	F042870	GAG	MNELPDSKIPWWDNHYEDVYSEELEDGYPYDMGTKIQE
Ga0334987_0000567_11581_11736	F093303	AGGAGG	MTENEKFVIFWLYNTVAKRMPDNPYGSNDILVNGINVTETVRKLLQDRLFV
Ga0334987_0000567_13342_13653	F043902	GGAG	MTIQQLRNDGYKVRVLHNRLYNGYYKWQVGSKPSGDHGYGPIDPDTKGGSTQIVIDSPSGDHYEGLAICSKKENYNKKLGVRIALGRCKIKQPAYIPVEVEND
Ga0334987_0000567_3262_3714	F007305	N/A	MKIIHKTIKKAYENWNPNSLVRCYHYCSAFDGTRMIEFAQNNPIKMSTKAFRIGKRFNIPKYLEYPYVHSESHLISKLLDRYNSIDPNWSICVLRINRQGLILGSKPCVNCSKLLNAVGLNNIYYSDDEGNFVCPTKTIKIEPLVDISYV