Scaffold Ga0334987_0000401

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000401
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39814
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (87.10%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F017469	Metagenome / Metatranscriptome	240	Y
F026822	Metagenome	196	Y
F046192	Metagenome	151	Y
F067515	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000401_33021_33197	F026822	GAG	MAEPRYLSGDEYALNGVELDIVKCKECAGEYDYAQYHSYTCSDCEDKMIARERERVNG
Ga0334987_0000401_33360_33494	F017469	GAGG	MKTICQFCGWEIRKPEWYNSYDQSYACDDCLMDQAVEREKEKAI
Ga0334987_0000401_33491_33652	F006842	AGGAG	MREEKRMKARPAMCGDCLTFLSDCAHGADYLQDLMTSAERLIQLAKEREELTK
Ga0334987_0000401_34584_34841	F046192	AGGTGG	MAKTFKTSTMLADNSGAVWVEAELTQAQVKRVINSYKRAGIDLTPYGSPDQVIKQVEEINAFFANDERSRSFVEAGKFQVIGVGF
Ga0334987_0000401_34920_35243	F067515	N/A	MKYSITNETLKSRAQDIQKEFETGGASWEGVALEIARLELSLEAIKKDGLGEEIGIDLGSWDGAYCASEEDITHYDPKCCQHDYESGCPCCLGDCGDCNDVGNIQVI