Scaffold Ga0334987_0000400

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000400
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39865
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (86.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F012770	Metagenome / Metatranscriptome	277	Y
F029678	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000400_13140_13289	F029678	AGGAG	MSKVRGFVIFNKVTGEKLATLPLTIPIGATVEAYERDGHSVSWGWDERE
Ga0334987_0000400_32342_33019	F001599	AGCAGG	MQETVSIAWCDNGMVDGKFMQGVTDVMLKSGITFQSTLRSQGNQIARQRETVIRYWHEQNKSDWLLWVDSDVVISPETFLKLWNAKDKEQKPMVTGVYFTTDNPEEPLMVPMPTVFNFADNKDGGFGLTRVHPLPKDKLIQVGAAGMGFILMHRSVVDRILKELPDVQLFMEMGRGTKFIGEDIYFFALCDKVGIPLWCDTSATAPHMKRFSFDEHYYNAMTKRR
Ga0334987_0000400_9307_9678	F012770	GGA	MDFDELEPPESYCHECKEQFDNSFDLIDHTLEDDEEFDPYYVLPNGFKLLLGSLLRFMYHHRDEPEKIALISQSTYVTLFASEMGYDMVDELVEDMVVKSELQNFDEELKKLLTKDDDGEGGA