NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0000185

Scaffold Ga0334987_0000185


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0000185 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58026
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F001806Metagenome / Metatranscriptome631Y
F067649Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0000185_2107_2322F001806AGGMDAGIRQKRVEGLEAIKNKAMEMASKGADSFEVSSFVRDARETLAYELPDENAFQKAARATLTYKRQKEGF
Ga0334987_0000185_36612_37058F000973GGAMLFYTLAFNQNMSSMSYGIRKGLEDIAHELKGVRNILASMWHSRYQTQETDQLNPQAFADEYISTEECARRLGISDQTIRNWIAIGKKKPEKGWTEGLHYVNVSPDPSKKAVIRVPWNHLIMSFSKNKDIDLSDFYGRKYQSTQEKLE
Ga0334987_0000185_52679_52864F067649N/AMEIYISLGEWMNTLQGRMNSAVDGDCFCLPSHMHLHAYELVKETWFPDRDFKVELKEARK
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