NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0000184

Scaffold Ga0334987_0000184


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0000184 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58048
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (25.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023345Metagenome / Metatranscriptome210N
F043929Metagenome / Metatranscriptome155N
F050320Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0000184_47597_48283F050320N/AMNKKLILFSHHKVDELTINRFNNVKKLNPSWDVIPIGFDGYELLSDSIVTNKEKYPSNKDIQYFASYNHIDWFDPDLFLYEGYIQKPDYDEYFLYEYDTDSNVSIESFFDTNVDFFGNGICNPAREDWDWVKLYRKHNPYNIKFPILYAYGQSTCIYFKNHILKQCVNEVITNKHLYDGMLSEVRGGTLVSQFTSLKKGREDINDFISWTPGDININTNQPHFYHPVK
Ga0334987_0000184_49030_49626F023345N/AMSNTINENDLGDRMYTGQSFVQGGLGGASSLGTYSSPDVSQNPGSFKYAPTIAGSASDISTPPPEDYDNKSTYDPGQYEKDVQDIKYKVTPDEVLAGLQYELKKMVFKRKDLAKELVVRNLKEDNKYYSKLHMLNIDDDDKLPVKPSFMSPESKAEPYNLKATPQQEAVDYRTPQEKEIGKIIREMAQKKYEKRFPKA
Ga0334987_0000184_57098_57403F043929N/AMNKFYIVDTTQRKEPFIFESVQGLVKHLEGTVQRKFGLSRSNYMQNLIDLGHGYDDREGRTFTESMRTVFNIGIVSKGGILKNCNVHDVSHYSKYRTEMGD
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