Scaffold Ga0334987_0000026

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000026
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 122643
• Total Scaffold Genes: 135
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (17.04%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002332	Metagenome / Metatranscriptome	569	Y
F006215	Metagenome / Metatranscriptome	378	Y
F030735	Metagenome / Metatranscriptome	184	Y
F050137	Metagenome	145	Y
F053077	Metagenome / Metatranscriptome	141	Y
F071153	Metagenome / Metatranscriptome	122	Y
F091487	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000026_104099_104650	F050137	N/A	MDILNWLYLKSQQLIKTKANNANTDLVVLGAEVPFTQRGDGYQSYAMTLADATQSGCTANTKHYELDITATSVVTVDTPRGIIDILGMGSSVLLTPDIAFASSVSFIIDNPDLDLTIANRDNIYVQYSVYYKNTITDNAIPYLISTGIATGLEFNLYNANPTLAGVNNWTGALYVYYELYTIN
Ga0334987_0000026_109743_109964	F030735	N/A	MITKAVFIWLLLTGQVEYQQNGGDGRKQYALFFEDGTVVDYAYKAEILEYIETGTFEYDDTLDDKVTDAHKGK
Ga0334987_0000026_114724_115008	F053077	N/A	MNLNMLYQLPNGKVIFLTIDQFLDLTDEDIQYLMSIDAGEHTVSPFTDSAVVANTKEKYYDFDYYVDDEIDINNIVSDDIPFDDIIDLNDSLEE
Ga0334987_0000026_1165_1542	F071153	N/A	MFSGKFIKKDGKLTYASPQDKLAYEIFVDKIQEGQKVEMYIGLANADHSIAQLAKVHACIRELAKESGYSFDEMKVLIKEKSGLCYDGGDAILCKSFSDCSKDEIALAIEACIQIGRENYNINLT
Ga0334987_0000026_19025_19177	F091487	AGGA	MIEAYMAGFAAAIEAGLKDYPTKQEARDWFDNEYGQQESEECDCCEDTEE
Ga0334987_0000026_88335_88715	F002332	N/A	MALVNQVQKRIRMPKWDVVKFQILTHCYINRITVSESDLNCLTLLSFNQPIELTHFCYDASSEEDWIFKSPQTVRNCINKAEKSGLVVKDSENKKQILLNPTLQIQTEGTLLLDYKILGNDTEEVQ
Ga0334987_0000026_91329_91574	F006215	N/A	MEVTGYKYTTEQDAINARETCDTYYGIPIAPDDVTQNWTDYQIATLDNPIFYYITFDESLKVVLGDPTKFEVTTQPLPFEN