Scaffold Ga0334987_0000016

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000016
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 140278
• Total Scaffold Genes: 211
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (12.80%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007031	Metagenome / Metatranscriptome	359	Y
F025686	Metagenome / Metatranscriptome	200	Y
F051871	Metagenome	143	N
F091919	Metagenome / Metatranscriptome	107	Y
F098949	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000016_10900_11148	F051871	N/A	MAEFSKQWVEMNDSEMGWDFDIDQIVSELPTNHMIPYICEGFGFIAIGKNEQDQIFLAMPTGNFSEEGSEVDWKPIEEVING
Ga0334987_0000016_23214_23378	F091919	N/A	MENLQIKIVITDGEKEAKTSINIEDYQMMKELHGVSLIDEQVDVLLNEIKKSSH
Ga0334987_0000016_23773_24123	F025686	N/A	MAVRTYIRVTYVAVSEWGKPIMTAYTQEDLKAGLDEYYGIGTDPKAKYLDWTPYDSKYPDEFEGTYRYEVDDMNGGLEPEDVRVYCIEFYPTTRYEVDTQKEALIELTNINLEDEN
Ga0334987_0000016_39306_39527	F098949	N/A	MELLKHEVYSQTIENTYTINHPTEGVLIYKEWIDSNGGECLDFVLRSKDGYEIDEAVLIEEIQEFVDNLETIK
Ga0334987_0000016_81599_81850	F007031	AGG	MIKLIDLLSETQTETKYPPYMYSHAGFGCHVCKFYSMQEDKHYCGNKEYQKYMGTNELIDPITNEQIKDPSMWCSNWFLPKAE