Scaffold Ga0334983_0046783

Overview

Basic Information

• Taxon OID: 3300034060
• Scaffold ID: Ga0334983_0046783
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2828
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F043770	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334983_0046783_1321_1725	F000710	N/A	MATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPATIVNATQLRVTLTINNDVVIDDVVAHELGASVATGVTTGFPAFIPFPRALTGQDTILLRVTNSSGVSQLLNATVYYKNEI
Ga0334983_0046783_2_439	F043770	N/A	MDLQKRIDQLREQGFNNFALQDRPGPKPTKANCGRFYPLNKEKRGWANNGDEVSRDLVNYVNKFPGLYTLHYSRALLTSGTESFEIDTRPVDEQTPQTFNLADMDERNKDEKRSDELYIREILSKNGFLESEVARLKDKIEELEGM
Ga0334983_0046783_2279_2770	F002259	N/A	MQGTTRMVYDSQTTAALTHTFFKGAAQRAFPLTNVGANGNQFQVNEALLVEKIGFFVPTAADGIAYGGLGTPFASVKFDLVIGNKTVIKDATCEFGGEQAFYNDGTVGSSVIDLEGVGILIPPQVEYYVVAKGFGTTTRVAGELRLGCYLFGTGALLNFNTTI