Scaffold Ga0334983_0026936

Overview

Basic Information

• Taxon OID: 3300034060
• Scaffold ID: Ga0334983_0026936
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3786
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024249	Metagenome	206	N
F043238	Metagenome / Metatranscriptome	156	Y
F082108	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334983_0026936_2957_3397	F082108	N/A	MVDANCDFKGATGASITHYSKRTGDWGHPLRNEFLELYADSFTKEDWVYYLDDDNVLHPKFIEEWSNLHSLDCSIVTWGQVGRLRPTDQPRVGNIDTACYMFKPHDLPNLRFEMTYEADGTFAKAASEQGTLICVEQYLCYYNALK
Ga0334983_0026936_393_575	F043238	N/A	MKYATISQLLREMKTADLSESILKDIETIEQVHLRFAYHDALLRVPFEQWYESTFQTETK
Ga0334983_0026936_52_378	F024249	N/A	MIFTYNDLKFWLEDADLLPQSYWDALEDYDPDNKNSDEILAKWLGYVHVADFYNYEMDITYVEETYNEDGYTNTVAYPTTSVYGEAPKLAEDIYAKWLNWATQVASEE