Scaffold Ga0334983_0010789

Overview

Basic Information

• Taxon OID: 3300034060
• Scaffold ID: Ga0334983_0010789
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6084
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F011218	Metagenome / Metatranscriptome	293	N
F014228	Metagenome	264	N
F025437	Metagenome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334983_0010789_13_408	F014228	N/A	MPLNRLAMWTILLTATLAVVSSCATVKPVLQSVVVKDTVIVTQTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGAVLLMLILVGGYIVKRWVDKLTE
Ga0334983_0010789_3153_3482	F009202	N/A	MKHLLAMYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKANGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDSL
Ga0334983_0010789_3700_4119	F025437	AGG	MQMRPFELRQLKVSKEQYFARLGFPDNGGRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLMYGDYQHYYKVACCVLEENPMACIDKPDFESLQVELNKLNEVVAELSKYKELYLTLKRTFDEF
Ga0334983_0010789_925_1173	F011218	N/A	MSNEQQAKEAKQQQASMQYYTNPAKRRKIDFILEECATLMANCDSDYQSRQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN