NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335024_0318110

Scaffold Ga0335024_0318110


Overview

Basic Information
Taxon OID3300034051 Open in IMG/M
Scaffold IDGa0335024_0318110 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075700Metagenome / Metatranscriptome118N
F086627Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335024_0318110_2_262F086627N/AMKFIKYKQVARITFYGFDDLLSGNASSIYTEPLNSFRFSNNVNGLGVQTGNNAKRMRFQIKGLDNVKLSEHARFCIESINVPILYDA
Ga0335024_0318110_585_794F075700N/AMISEQSLEGWDNNPVKFSNVKYPQTKDSNAPQNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKMYFEGIEI
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