Scaffold Ga0335024_0087204

Overview

Basic Information

• Taxon OID: 3300034051
• Scaffold ID: Ga0335024_0087204
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1743
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009503	Metagenome / Metatranscriptome	317	Y
F058101	Metagenome / Metatranscriptome	135	Y
F105039	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335024_0087204_1048_1245	F058101	AGG	MGGALAMINPKDIYRATDGKIYSFSGFGGFMNCSDCDDDTMVNEYDREDGLVVWFCKKCEDRLHL
Ga0335024_0087204_230_391	F009503	GAGG	MEQVQFECRICKKVTRQLVHKITDNLPQGVEVIQCTKCEVMGVAQIGGKNADL
Ga0335024_0087204_372_860	F105039	GGTGG	LKIKLTANEMCVCMVAAVKITSDKGDLLESKGHYNETSFMTYLAELAESIGSEWAVAKYFGLPFDPFEDKGKRKADVGSGIEVRWTKYELGQLIVYEYDRPNDIAVLVTGTAPNYYIAGWIPVTMAQKPRYRHSKQPTWWVTQINLQPIENLRKSNYGTSAI