Scaffold Ga0335024_0001756

Overview

Basic Information

• Taxon OID: 3300034051
• Scaffold ID: Ga0335024_0001756
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12050
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010908	Metagenome / Metatranscriptome	297	Y
F015723	Metagenome / Metatranscriptome	252	Y
F024249	Metagenome	206	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335024_0001756_11068_11505	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTIKIQRANAFGGGGYTQSAPSSPSFAAKTDDRSASIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGASSAPASHTEHFANRNDPF
Ga0335024_0001756_7016_7342	F024249	N/A	MIFTYNDLKFWLEDADLLPQSYWDALEDYDPDNKNSDEILAKFLGYVHVADFYNYEMDITYVEESYNEDGYTNTVAYPTTSIYGEAPKLADDIYAKWLNWATTVASEE
Ga0335024_0001756_9516_9746	F010908	GAGG	MKQILSPFQKYECFSVDGHDYLVTDVTIIQDKDDNLVEWASEMKFKRLSDHKHYTMPITKILTNHKEGRAKHCKCK