NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335024_0001358

Scaffold Ga0335024_0001358


Overview

Basic Information
Taxon OID3300034051 Open in IMG/M
Scaffold IDGa0335024_0001358 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13490
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010152Metagenome / Metatranscriptome307Y
F014591Metagenome261Y
F040486Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335024_0001358_5278_5589F014591N/AMPFITFIYKVGKNYKTYYGKYCFDYISDDHEGLDNEVKYILIKGLNEYRKKNNIPKLKTKIIIGILSFSSNNIVSTYSTDNEIKCFDFYCNYDNKIYINGKLI
Ga0335024_0001358_7013_7291F010152N/AMGIYSNGDIFGIQIYNFNDDDISNILFEEKYDEIMSYNQMREAYLFYTNLNDKNNIFFKIYTECISTLSYNKDNFMMWHPMPLDTFLEKFGG
Ga0335024_0001358_7401_7688F040486N/AMTSVTEEIQQLQVRILELEKQKKEKDECDKKTSIEHNFKVINDVLTEKKTAINNNRYSKSVPLARYYDQELVTHLEAIYNILQIVDERLKKLEDK
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