Scaffold Ga0335024_0000782

Overview

Basic Information

• Taxon OID: 3300034051
• Scaffold ID: Ga0335024_0000782
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17500
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (73.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F057002	Metagenome	137	Y
F063629	Metagenome	129	N
F087962	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335024_0000782_11167_11574	F004362	N/A	MESRLKNWAWYVSYGVVSPQPDTTCRSFEKNYIPELGNLYAESEPHYEPDHVDGDLIEQAIKGLPLELRRTLKMRYVSHPYASTGQLAHALRISPHRLEVDLENAKKRLQQELDKKTKSAHYTNLLKMQGQKDNG
Ga0335024_0000782_16986_17216	F087962	AGG	MNRAERARNYLNDEFFVELLEAQKDLYKSYVFNSPEHDVEGRERALVKLRAIEDFEASLRSILQQADIEKKRFKVF
Ga0335024_0000782_1836_2279	F057002	AGG	MMQSSRKRFSQSLHDQYDPPARKAVSEWMKMKWGLNCIPNPNEYGVDLIALRGENPVGFVEVEVRSWAYCHYPTIHIGQRKDKLFQQDLPVLFFALTQDLGHAYWCRADIAKKHPIIEVKNFEVPSGELFYDIPVKEFRYVCLTDQF
Ga0335024_0000782_5582_5767	F063629	AGGAG	MEKTAFDNLMAEFGSIKNLCDKIGVKYVTAYAWKMRNGIPKKWHSAIIEASNGKLTAEHL