Scaffold Ga0335024

Basic Information
Taxon OID	3300034051 Open in IMG/M
Scaffold ID	Ga0335024_0000234 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	29549
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (8.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F012345	Metagenome	281	Y
F054038	Metagenome / Metatranscriptome	140	Y
F067422	Metagenome	125	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

603

Metagenome

281

Metagenome / Metatranscriptome

140

Metagenome

125

Protein ID	Family	RBS	Sequence
Ga0335024_0000234_17345_17776	F054038	N/A	MAYKNNGVFNVKYKTRNKIAQTLRRIILAETLIDTGSLYDSVRINAQIPALGQLEIQIIAMYYFGFLNNGTVNMASFDLCAKLTAELQNNGTTAEIFDQYTQWMAERYPILQVATILGEKTSLIYTFEPIGGEFDAALKFRGF
Ga0335024_0000234_19704_20150	F002018	N/A	MTSYQALINEITAFYDNHVQVMKVGSDFKEQMSNFATKDEKYPIIYIVPVSATPTENTNDFSLEIYCFDIIQKDRENINVILSDCQQILYDLYTYFINSDNYSFDVVDIPLFTPLNNDLLDYCAGWVMTATYSVNNWTDCAVPLKQGN
Ga0335024_0000234_7635_7781	F012345	N/A	MKYKLTYIIGLTTVQEWIFNSKNLAHYKKWDLIETGRFNMGHFKIEEI
Ga0335024_0000234_9926_10363	F067422	N/A	MEKLFILLTSLFLYSCSAHYHVVKAMKKGYKCDETSDTIKINSIDSIPYVLRDSIYWEKVIVQKDTIVRYNASFVPKTRFQTRIEYRYKTKVVKADVLKVKYKNKFITKYKINWFIVILSFILGLLVKFTFNETFRSRLKLLTKL

Protein ID

Family

RBS

Sequence

Ga0335024_0000234_17345_17776

N/A

MAYKNNGVFNVKYKTRNKIAQTLRRIILAETLIDTGSLYDSVRINAQIPALGQLEIQIIAMYYFGFLNNGTVNMASFDLCAKLTAELQNNGTTAEIFDQYTQWMAERYPILQVATILGEKTSLIYTFEPIGGEFDAALKFRGF

Ga0335024_0000234_19704_20150

N/A

MTSYQALINEITAFYDNHVQVMKVGSDFKEQMSNFATKDEKYPIIYIVPVSATPTENTNDFSLEIYCFDIIQKDRENINVILSDCQQILYDLYTYFINSDNYSFDVVDIPLFTPLNNDLLDYCAGWVMTATYSVNNWTDCAVPLKQGN

Ga0335024_0000234_7635_7781

N/A

MKYKLTYIIGLTTVQEWIFNSKNLAHYKKWDLIETGRFNMGHFKIEEI

Ga0335024_0000234_9926_10363

N/A

MEKLFILLTSLFLYSCSAHYHVVKAMKKGYKCDETSDTIKINSIDSIPYVLRDSIYWEKVIVQKDTIVRYNASFVPKTRFQTRIEYRYKTKVVKADVLKVKYKNKFITKYKINWFIVILSFILGLLVKFTFNETFRSRLKLLTKL

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