Scaffold Ga0335023_0126471

Overview

Basic Information

• Taxon OID: 3300034050
• Scaffold ID: Ga0335023_0126471
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1463
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001460	Metagenome / Metatranscriptome	690	Y
F007468	Metagenome / Metatranscriptome	350	Y
F009685	Metagenome / Metatranscriptome	314	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335023_0126471_1128_1322	F007468	GGAGG	MTTQTKSSKFIEYMKIHLISLNQDLEADYNVQSKINIQGQIMATEHLLSVATDIMNNSNERAYG
Ga0335023_0126471_1306_1461	F001460	N/A	NRMINAIHDSKLFYLRTPSDLMDKAPLRKDLEDAVSFLQGLWAEGYFDYTN
Ga0335023_0126471_25_171	F009685	AGGAGG	MKMSDQHIDAVLAEAQQLLWGGSETENIAAHNLISKLIQDRMSETNLS
Ga0335023_0126471_468_695	F001019	AGG	MTYEPSLEILEVEYSCSPGGVDVFEVYDKSDIPLDMPIYETEDLTKAVLFCYNLGKDFTVRTLAEWNERELAYEA
Ga0335023_0126471_692_970	F000263	AGG	MTPEDIGLPPHLQRLVNYDVNGLDIMHGELKNLMLMAEQDLANALEQEELSEEAMDSMVRTECEGRLDTLTELYNLTYQLSFAIAERQGQKV