NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335023_0045212

Scaffold Ga0335023_0045212


Overview

Basic Information
Taxon OID3300034050 Open in IMG/M
Scaffold IDGa0335023_0045212 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2577
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F005697Metagenome / Metatranscriptome392Y
F009503Metagenome / Metatranscriptome317Y
F021065Metagenome / Metatranscriptome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0335023_0045212_218_712F021065N/ALKITLTRQEEFECHDAALALARENKDYWQTRPGGYSMEKSFHDLIAQDAQSIGSEWVVAKYLNYEFDPFLQKGKFKADVGSHFEVRWTKYASGQLIIHEYDRTDDVAILVTGESPHFHIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGHSSV
Ga0335023_0045212_709_915F000403N/AMEATNMSDYIEIINPRTMTCKLMENGVVVAEYKVEQCDKCSSLVKFDEFGYQKGYGNEKIIWFCAGCR
Ga0335023_0045212_76_237F009503AGGAGMDTVQFECRKCKKITKQVIHKVTDNLPSGVEVIQCTKCEVMGVAQIRASNADL
Ga0335023_0045212_897_1562F005697GGAMGFLDNYEGNKERTDRWIATFPQGIIHAVIEEFNAEKGYILVKAMGYRNQEETIPADIDYAYGFLAAYNPNMKRWFVEDTVTSAKLRVMANLLGGTEKATRETMQQVESMSAKIVTTDPAKDYDYWTTKFGEVPSYKTEEDMEAAGVPTLASGVAEIATQLGGQLAAEAPQCRHGHRVFRSGNSAKTKKDWANYSCVGRKPDQCDPIWLVLTSDGTWKPQI
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