Scaffold Ga0335023_0012715

Overview

Basic Information

• Taxon OID: 3300034050
• Scaffold ID: Ga0335023_0012715
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4922
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009461	Metagenome / Metatranscriptome	317	Y
F009887	Metagenome	311	Y
F045748	Metagenome	152	Y
F066709	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335023_0012715_2008_2202	F009461	GGA	MEINGLTVLWFMIATGLIAYALHLLKLESYNKGYWRGRAIGWESHRRLTNIQKKSDEVFDYEKN
Ga0335023_0012715_3142_3336	F009887	N/A	MGDMEMIDATGMKAIFTDNGVVLDVVPMSECCEMCNDPRLMTVDGIKKCVACGCINHIELNHHG
Ga0335023_0012715_3329_3706	F066709	GAG	MDNKSDWDLDLRFGQEGEVAANALLTAPIETVEVKRDRRWKDTGNLYIETDCWSDVRQEWYWSGITVSKATHWSFILEDILITVPTDKIKLAIKTYGIFKEMNRPEYSTKGYLITVDNLCRVAFV
Ga0335023_0012715_3747_3950	F045748	N/A	MLFYEKAGFDAGEEHVVVMCVKCENTGVKARIEAVTDKSVVRCSKCGAWKLESSNCSTCKKTNALSV