Scaffold Ga0335023_0009807

Overview

Basic Information

• Taxon OID: 3300034050
• Scaffold ID: Ga0335023_0009807
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5601
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001143	Metagenome / Metatranscriptome	766	Y
F073554	Metagenome / Metatranscriptome	120	N
F074881	Metagenome / Metatranscriptome	119	Y
F088893	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335023_0009807_2167_2313	F001143	GGAGG	MSSWLIAVVGVVYTIVAIDLIVKGNTGLGIAFVGYALGNVGLYMEAAK
Ga0335023_0009807_4380_4556	F088893	N/A	MKHIDKNQILFNVEGETFKVKIGENLDLEEVYTVLLSALVYLEDLASGNTAHPSQELH
Ga0335023_0009807_4570_4740	F074881	GAGG	MVFDVDTNEAAFIVRVIGQLPTESGAFPLHQKLVAQFQEQEKQSATEPLVTDVTAK
Ga0335023_0009807_84_293	F073554	AGGA	MSIGMYGIDDEDVDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVSEAVLNKVHNGYVTAQEDPFKW