NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335023_0006331

Scaffold Ga0335023_0006331


Overview

Basic Information
Taxon OID3300034050 Open in IMG/M
Scaffold IDGa0335023_0006331 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6966
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013186Metagenome / Metatranscriptome273N
F019139Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0335023_0006331_1002_1667F013186N/AVKGILSTLASNYLRLKRNTKVDSLENAFVHQLGGGYGPRTLCNGMKRALDKYISSNYAEVRAYTSYFLSKMGSYIDADTVINNSYLHVVNIDGDPDKVKGYLLNTIKYQILWSTSKSHRDDKITAIEHPNTEPADDDDLVHKLREDRAYSFNKGLIEIYRNEITDKIQLIVFEAYIDKGYITSRAMAIYFGITHTSAYYLIKELKQNINKLQYRYEVEPIN
Ga0335023_0006331_1793_1984F019139N/AMKTKNEYLGQYITTYNGNYENTIEVTEEMAQEHKYYTSIGLGYLFEESTPKAKYKGVENEKAD
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