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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034050 Open in IMG/M |
| Scaffold ID | Ga0335023_0002410 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11390 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (16.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002287 | Metagenome / Metatranscriptome | 574 | Y |
| F004838 | Metagenome / Metatranscriptome | 421 | Y |
| F022872 | Metagenome | 212 | Y |
| F041161 | Metagenome / Metatranscriptome | 160 | N |
| F067260 | Metagenome | 126 | N |
| F083616 | Metagenome | 112 | N |
| F083794 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335023_0002410_10084_10692 | F004838 | N/A | MALSAQDKILYVANKLGLSTLNQMQGSTGAVYDVDTDISGQIFTSASRHQNPGVTNVTQNEFEVNEALLVESISFYIKQANGDIVNFQRDYGSNAVIVFDLVIGNKRVMKDTPVFASGSPYTFANVANQRIAFGEDNPTIFLPRHQVFMEGAGILIPPQVQWYVDYRIFNVVTGAVIAASDNTAIGCSLFGTRVLLNFNTSI |
| Ga0335023_0002410_10692_11282 | F002287 | N/A | MSQISKLGYVDNKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKTFQGLTQGQTNLTQNKLDSMESMVIKTIMLTQFATDGTLTEIGGLRQQTISIIVGNQTVVKNLPIQFNQGINGQAYDRLHENAGSRADNVSAGAAIVQVKQPVEIRLLTDIVIPPQVAFEVRLDSNQGVYGTGAVVCALSGYGKIFSAGNTF |
| Ga0335023_0002410_2181_3008 | F022872 | N/A | MSWQIPQQIEQDIIAGKAQYRTFQTGVGGQSILPVPTNAYAVVFGYDFSPAGGGIIRYYEDLSASVVGAQTVLNNNVLRFFETQQISFYTGTDFFPFIHHIDLKTAALIGTIQNLIPPSTNAVINNQFVQEIDNSPICRQVYITSDKDITISVGLILDSNVATTGAIPITNRTPALLTYGGSPQTPAVQTDFGPALTPIQFMQPSPKDFQDFGFGLLPNGANGQAFATPDATRGLLDPSVYLTSLGATFRDAAAANYFLCLHYALYTRTIPEQRG |
| Ga0335023_0002410_3008_3649 | F083794 | N/A | MTATQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTPADIKKQADKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEPAPATAVLNSTPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGHSDYDSL |
| Ga0335023_0002410_3636_3839 | F067260 | N/A | MTHFDKVVDPDLKRCETPEQMLQVLMYHYDLDCKLGTITSLAFRQGLKTAVNMIAAKAKSQDSALQN |
| Ga0335023_0002410_7905_8309 | F041161 | N/A | MMSKQIADSIEFANDFLPARTTCQEIWYILKDNLIYRNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALACAKARNIPARAVIVGNSSQSPTHIYAQLFDGSKFVDFDLVSSSYGTTKAYKNKQIIKLH |
| Ga0335023_0002410_8310_9080 | F083616 | N/A | MFLQLHDGPDLPYGLRPFPYPKRSGPMMPVRYAEDPFAPGSPVMQTTPYRLLAGCDQAQVYADFVPQNANGWKVRLDQVSSGQKLVKDYQTLRAAKGTGSAPIYSADGTITGFQQASKAQEVAAYIELGLKALQLAQTGVRAGEASRLKEDAQKLYNENKWGIADVCNQTLVMLQNNAQNCYDSLNWWLKDQGTPGKNAGQKRIANRSVVIRQNALLILVKEIEARGSSFTPGGKGAPVGIAAILALVAGAAFLRF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |