Scaffold Ga0335023_0000196

Overview

Basic Information

• Taxon OID: 3300034050
• Scaffold ID: Ga0335023_0000196
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36648
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (54.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F014737	Metagenome / Metatranscriptome	260	Y
F043944	Metagenome	155	Y
F054875	Metagenome	139	Y
F073561	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335023_0000196_13443_13925	F073561	GGA	MALFSKNVITQVSGFDNPLITGELVYNQRTYWNLQMTSEGAPVDLTGTTITASIVRRTVSNLIDTRNGLSFDVANYTPTPTPISLTITNQVDAQGSFTLVIDDSAWSLITTDPELDIDAVDPVCFTGRIKISFPANTPTPAQDNIIFLMFLVRSDGVVVV
Ga0335023_0000196_20780_21391	F000220	N/A	MSEEKPSDILSKVLSYADSPFKLFALLLMAVFAFSGYFIWQNQSFLFEAYKENKKLPMIADDRAEDVVAHLFKNTDATVIAIFKVNPLFGTRVLFRAYTRDGRDKTHEGLDVGLFTQSSANNRDVVALMANEMPCSEYAVAQSEIGLWYIEKGVTFGCRISVPPEQGRFVGQITVGWAKEPTDLDKAKSMLQIASTMLSKSKQ
Ga0335023_0000196_5552_6034	F054875	AGGA	MTKLGSAFGEKYQAKRKDLLTRSFVLNGHTFKVRIPLVAESDAIYKRVSDPDEQTVEKVYQEITAPLRQFENNQTEDFQFTHNDILVEGRSMREAAKNKAITEARITEFFKLLIPEMEGVSLEDLTYADIEEEFPISVQMMIVEKIGEVISPTYREARGN
Ga0335023_0000196_6067_6396	F043944	N/A	MIFNGHTLETIEELDDVTLANIQTMYADGLIGNYGILTQLATLTNGVFNYMRPANSSPYKLANILGSAYDYIYPPLTAEQQKAAVNDSLLAFMSQANGFDKTKFGVKDG
Ga0335023_0000196_8979_9629	F014737	GAG	MTTINAVTGSQINHAEFVKLTVGNAGTVYTFCNAAAPITVGGTTFSNLGALLSVGDVQRDIKATSDDMTIQLTGINPSNVALILSSDIKGSLVEVWRGFFNSNNQIITTPTTQFFKRYQGIINSVSITEDFNTDARTRIATCSISCSSMRRVLENRLSGVKTNQNNWQFIYAGDTSMNRVSEISNTFFDFGSPPKTQTQASETTVTTENSSAKEIP