NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334953_006389

Scaffold Ga0334953_006389


Overview

Basic Information
Taxon OID3300034031 Open in IMG/M
Scaffold IDGa0334953_006389 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 49SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2261
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044877Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0334953_006389_1706_2008F044877N/AMVTIDRKTIDELFGLIGECVDTITDLQPCEIFITSAKRCLLDTANIELASSVEVSQAVLLMDSWLKVVPKRHEEMACWLQQANAITYLALAPIKLGKCND

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