NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334953_003892

Scaffold Ga0334953_003892


Overview

Basic Information
Taxon OID3300034031 Open in IMG/M
Scaffold IDGa0334953_003892 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 49SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3225
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012744Metagenome / Metatranscriptome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0334953_003892_1021_1716F012744AGGVLDRITHGTALEILSRAWAACRFESPHTAVSEHHWREYFGLPVMSLSAAANYYGLKVSELEPHIRKKNTYAGGLFESGMLVLRGAALEFARLIGHTAEIQQGLVLLPPRAVLSLCLYLRPVPAMAATVNAFWDYVLAQKLHESTPADWHYTSMQHVEIECSRIAEQKLIECLAEAKERKLYPYIQHFGRQTCLEAWASLFTYEGEFPPPRGSFYVERQDWFDRVSHISLWR

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