Scaffold Ga0334952_000422

Overview

Basic Information

• Taxon OID: 3300034030
• Scaffold ID: Ga0334952_000422
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 48SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23330
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040840	Metagenome / Metatranscriptome	161	Y
F055604	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334952_000422_15608_15790	F040840	AGGAGG	LTTKTENLIPARLSRVSDVEPTERPEPAAKRAFVEPEVSFPIDVLEATTFFQLTDSGATN
Ga0334952_000422_6470_6625	F055604	GAGG	LYVRLFAASLFAAWLVGKFVLGGEGFVHILLLCAVAVGVVQLVHERRAARQ