NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334951_001130

Scaffold Ga0334951_001130


Overview

Basic Information
Taxon OID3300034029 Open in IMG/M
Scaffold IDGa0334951_001130 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 47SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9299
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042667Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0334951_001130_3637_3786F042667GAGMFGKWSVILRVDDDETVYSLVSGEHPEAVFTGSKKQSLKYIRDISGGNE
Ga0334951_001130_8202_8351F042667GAGMFAKWSVILRVDDDETVYSLVGGEHPDAVFTGLKKQCLKYIRDISGGNE

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