NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334949_001243

Scaffold Ga0334949_001243


Overview

Basic Information
Taxon OID3300034027 Open in IMG/M
Scaffold IDGa0334949_001243 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 45SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11973
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007252Metagenome / Metatranscriptome354Y
F012744Metagenome / Metatranscriptome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0334949_001243_3829_4611F012744GGAGMSHIDDCPAGRSQHLTRGVFFKNHVAKVYVFDRIRHGTALEILSRASAAYRFESPDTAVSEHQWREYFGLPVMSLSAVAEYYGLNVSGIEHHIRRKNTYAGGLFESGMLVLRGAALESARLMGHTAEIQQGSVLLPPRAVLHLCLYLRPVPAVAATVNAFWDYVLAQKLHESTPADWHYTSSQHVEIECDRIEEQRLLECLSEAKERKLYPYIQHFGRQTCFEAWARLFTYEGEFPPPRGSFYVERQDWFDRVSNISLWR
Ga0334949_001243_6532_6870F007252GAGMKKSKQKSKDGRGGARPGAGGGTRWKHGKTKLVRLPVALLDKILEVARYMDQNDGNLPPSAPPLITSGHPSHSLSPEELKEFFARKKAQKLAEQVMRGDEWVLVSDETFASF
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