Scaffold Ga0334949_001101

Overview

Basic Information

• Taxon OID: 3300034027
• Scaffold ID: Ga0334949_001101
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 45SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13161
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063207	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334949_001101_9010_9816	F063207	AGGAG	MALGKKQQQSPQIIIPPSARTQAAYDDFDEEKVPLHQRLGDLSDAVFEFIFSPNTIKFGILVFAGFCAAIDLAGYYDLINQLFTTRLDEFGRTLPVEAPVGERLISSFVRFPILGTLIVWLDRLTGGIVAFIGAIAIWFVIQGLEIAARFHLYLPGAAENLLYRQNRKRIENPSNNQPATKKAYKLASGETMAILRWLTVAGIFAYIVNAYALHLVRPWINNLGNPLWINCTWNGLALAGVELALVLYRGYKAVTLSAAEKADKDRLL