Scaffold Ga0334946_002975

Overview

Basic Information

• Taxon OID: 3300034026
• Scaffold ID: Ga0334946_002975
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2593
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F079676	Metagenome / Metatranscriptome	115	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334946_002975_1143_1385	F091480	AGG	MRELRVYIDPGGYGARGERTAFYTRRADGPYYRWLYVEGSGRWRYSRVRLDRMTLSVLSVAPWDAIPTTLRERLGEHYLE
Ga0334946_002975_238_456	F079676	GGA	MTNHGAGIKEGDSVRALDGAYKGRVGTALRVVTTSDEGRTSESVLVSFPAGGADYLDADALEKAERGERSDD
Ga0334946_002975_458_655	F081092	AGG	VNGYDDFIERLESALADEESREDFLEYLQELTGEGRAEILAEADRREADANVAQGRDGRVASDGK
Ga0334946_002975_874_1104	F020517	AGG	LSGQRPVSRDARHYLVKRPNEIIAKRRSWNEVQAELQAKGTDADEAMLFRGFVAEDGTEYRDMYADSRTQVTEHAG