Scaffold Ga0334946_000175

Overview

Basic Information

• Taxon OID: 3300034026
• Scaffold ID: Ga0334946_000175
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28827
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F033742	Metagenome	176	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334946_000175_10688_10933	F033742	GGAGG	MYIYTIQAMPGQKAKFEGDPSVKYRIRRVNDSIAVAKKGRSEIIRENLDYAEALEMVNGFNSMEGKSQVIRDEAARQKNGL
Ga0334946_000175_11701_11943	F091480	N/A	MRDLHVYVEPAGPGARVERKAFYSRRADGPFYRWLYAEGSGRWRYSRVSLDRPTLRVLCVAPWDAVPPALRSRLGEHYLD
Ga0334946_000175_11984_12214	F020517	AGG	LSGQKPVSRDARHYLVKRPHEIIAKRRSWNEVQAELREKDSDADEAMLFRGVVTADGTEYRDMYADSRTQVTEHTA
Ga0334946_000175_12432_12599	F081092	AGG	VSGYDDFIERLEAALGGEEAREDFLDYLGGLTSEGRADILAGADRREAEEEAEVA