NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334946_000001

Scaffold Ga0334946_000001


Overview

Basic Information
Taxon OID3300034026 Open in IMG/M
Scaffold IDGa0334946_000001 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2064147
Total Scaffold Genes1761 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1075 (61.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014784Metagenome / Metatranscriptome260Y
F039537Metagenome / Metatranscriptome163Y
F050191Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0334946_000001_1553479_1554237F014784AGGAMADWLAARTKKLREFFELAPDAQLTETDAAKFELPDEVAEALIHFNIEWHIIPMAGAVALDDAYLARFYPTAPRDFTKPREHGASCRERLVEGHGRHQGRIVGVETTPKPHYLPGNRQFYGTHYGHDSSADPFTPYMGRAGMMNGTRYAHNYLSLRAFLNVVGEDWRARSIMPAGYRITVCPPGVFNLVGTLFHPEWSDTDTLELGFYRDERGNATCYAVGSNAPGDFSYINEVEGEAEWSLMGFRLALVPE
Ga0334946_000001_451812_452120F039537AGGAGMVSKKAQSKAGIAEKRRGQQMGDERSAPDRTLDAKTATPALRGRRKSASKFFGDDSSQNVGSDGEAPRDNTPSVPAAIPTGTKLGESGGERVFKQRQKRNQK
Ga0334946_000001_622177_622437F050191GGAGGMTETNNQANAADNDAVDDRGTDAAGGLALLRRLRDEGFEADDEKFAVALGRPVEEVSAWMQGSEPPDDDIIMKARGIAKERNVAIE
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