Scaffold Ga0334940_001278

Overview

Basic Information

• Taxon OID: 3300034025
• Scaffold ID: Ga0334940_001278
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 36SMC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7278
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F079676	Metagenome / Metatranscriptome	115	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334940_001278_3339_3560	F079676	GAG	MGSEAAHRGAGIKAGDCVRALDGAYKGKVGTALRVVKSSDEGRTWESVLVTFPAGGADYLNADALEKTEKPKG
Ga0334940_001278_3760_3921	F081092	AGG	VNGYDDFVERLESALVDDVAREDFLEYLEGLTSEGRAEILAGADRLESEAEVA
Ga0334940_001278_4134_4364	F020517	AGG	LSEQKPVSRDARHYLVKRPNEILHKKRSWNEVQAELEVKGTGADEAMLFRGVVTEDGTEYRDMYADSRTQVTEHTK
Ga0334940_001278_4403_4645	F091480	AGG	MRDLHVYVAPAASEARDARTAFYTRRGDGPYYHWLYAEGPGRWLYSRVSLDRLALRVLCVARWEAVPAALRDRLGEHYLE