Scaffold Ga0334927_001963

Overview

Basic Information

• Taxon OID: 3300034024
• Scaffold ID: Ga0334927_001963
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 23HNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7682
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → Microcoleus vaginatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007252	Metagenome / Metatranscriptome	354	Y
F044877	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334927_001963_24_464	F007252	N/A	MNNKIHPFFEDVTLWDFNMKKSKGKSKCGRGGARPGAGGVCRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPPSAPPVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERVVVSDKTFAAFDIFDVPPAQKARSSSR
Ga0334927_001963_3962_4264	F044877	N/A	MVTIDRKTLEEIFSLIGDCVDTITNLRHSDVFITSAKCCLLDTGNLELASSTEVGKAVLLMNSWLEVIPKSHKEIDGWLQQANAITYLALAPIKLGKSNG