Scaffold Ga0334927_001398

Overview

Basic Information

• Taxon OID: 3300034024
• Scaffold ID: Ga0334927_001398
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 23HNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9402
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Argonema (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035160	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334927_001398_2294_2524	F035160	N/A	VYLREEYIMSVLQQELRASEQELSKAIAQAWLSGVPEGTMIGDLPLPKKPDDLTEEQISDWLEGPAEIAPGLAPKC
Ga0334927_001398_2681_2923	F035160	N/A	VYLTEEYIMSVVKQDLTASEQSMSKAIAQAWLSGVPEGTMIGELPLPAKPDDLTDEQISSCLEGRAEGFPGGTIPAFYSC
Ga0334927_001398_3090_3305	F035160	GAGG	MSVLQQDLTASEQSLSKAIAQAWLSGVPEGTMIGDMPLPKKPEDLTEEQISDWSQGRTEGFPGRIRLGFCC