NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0128616

Scaffold Ga0335021_0128616


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0128616 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1454
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044447Metagenome / Metatranscriptome154N
F044457Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0128616_112_735F044457N/AMKAKTYIFCHDTDIVKQCEAEGRFRDFFPYTWVMLGFKDFDGMAGLDHIIARDEPDNIENHRNLVAWTGWYALAKNGYIKNGDVVNLFEYDLTRNVDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGSGAKEFYQPVVPVTSNYTLTWDDSYLDLTLACIEQDLVAISYVGHILERAYSQRFADIPYNVAAFKHAFANSHGF
Ga0335021_0128616_1342_1452F044447N/AMAMKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAI
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