NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0114387

Scaffold Ga0335021_0114387


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0114387 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1557
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008604Metagenome / Metatranscriptome330Y
F022353Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0114387_12_419F008604AGAAGMENRQAKGERHRNVSREALEKLSMDISKRWLGDYEGLEVIPGIIGTVMLGVSAVEMTLSTVVRMSVLYAWKGPGPWVAAALWSTAFQVVIMPCRWALEWGQNQGEAIAQAMEDKVGGANLPLDGGGTSTTDSERN
Ga0335021_0114387_534_1301F022353GGAVAIEDAVKKVIIRGAHDILPNHVVGGMDATEGTYVWDHIQRGCSGGEWEELYRGKLGILKDEVITLDQSAGQRAWLKLGEVVSICGKRLRSTHLQHVYVRWIRPQRARGVITKHPTSLEEKELEGLRLEWSYQRGRSSYMIRRELREAATDGCWTRGTLVELRQSQAAGARDARSAAAYFGVGHLAVRSGGVVYIARCGMVVVELRNHTYCTQEIPVMHRGEELYVDPLSLVVQRSATPVRCRKGTPPRWKIGKD
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