NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0097928

Scaffold Ga0335021_0097928


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0097928 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005173Metagenome / Metatranscriptome409Y
F007682Metagenome / Metatranscriptome346N

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0097928_1516_1707F007682GAGMRLEHQRDDLETRLEFLEADVAYLRSDYLFLNDGDKKDAMFATICGLDSEIAQLKSELAIVNGL
Ga0335021_0097928_16_720F005173N/AMRLDEGFDGNFFYGPSLSLDREPFVNERYLYSDGQYHNCKPYLDMEKEFFSENAAIVREVFFDTDSLLGVDSEKDVGVEDAVEYEDLVPEILSEENQLRHAAVREILEMKIVRMSPVNSDSEDEETTGRVTSPMVVETISDLAEASVATGSTDNDVNNQLNLVIAAEAGCVENVVKGRVKLPSDPGPFSEDVSLGDFVPRFRRGFVPFLAFSDWVGGEVSLYFLRSYRWCIFCF

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