NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0017908

Scaffold Ga0335021_0017908


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0017908 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4661
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001981Metagenome / Metatranscriptome608N
F003660Metagenome / Metatranscriptome474Y
F011215Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0017908_2568_2687F003660N/AMNHETKAALKAALVTGYIMLTACLGIAFFGRFIFALITN
Ga0335021_0017908_3357_3578F011215N/AMNLLEKMNAEEFKKLLEFKEKFPIIGLDLVKALTEKTLPIQLTLGECIDLSNAVGIPYGQYCNRIFATFISKP
Ga0335021_0017908_3575_4024F001981N/AMTYPTLITIPKSDICKAEIAQIAQQLTDRINDGEVNPIEAHIKLKAIVKALEATIKATEQTVADEAGKHGKTFQAFGAEITLKEGSLTPNYDEDPIYADIKAQLKAREELLKIAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFK
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