Scaffold Ga0335021_0013751

Overview

Basic Information

• Taxon OID: 3300034023
• Scaffold ID: Ga0335021_0013751
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5454
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030431	Metagenome / Metatranscriptome	185	N
F043225	Metagenome / Metatranscriptome	156	Y
F043920	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335021_0013751_1473_1646	F043225	N/A	MNIDSINAELQTVAFMQQEEQIDLTYQEFLDTINAYHDMMMYESQSYDLDVFYYGEN
Ga0335021_0013751_3894_4082	F030431	GAGG	MSEIEIEINELLDTTVMLCEEIAEQVGCPVEFVEVIMQRRWDNLLFSNDDFMNGYDMAKENA
Ga0335021_0013751_4082_4246	F043920	GAG	MRGSIIMLVSFLIIFGAVGGIEVNPDADLLTLIMVAIGGLIGMLIGVSVIREDA