Scaffold Ga0335021

Basic Information
Taxon OID	3300034023 Open in IMG/M
Scaffold ID	Ga0335021_0012057 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034023 Open in IMG/M

Scaffold ID

Ga0335021_0012057 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5896
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5896

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (85.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F005092	Metagenome / Metatranscriptome	412	Y
F014496	Metagenome / Metatranscriptome	262	Y
F015730	Metagenome / Metatranscriptome	252	Y
F026861	Metagenome / Metatranscriptome	196	Y
F083931	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335021_0012057_2107_2316	F000808	AGGAG	MEYTYALTTSYDGELVNTLRVSDLLEAVNAWDKCVDFGDAKEYATYNLSDPLGKMYTKTFYRNGEVSIR
Ga0335021_0012057_2772_2984	F005092	AGGA	MDKLEYALRQIANCNLCEGKGVFYFGSGDYYDFEDCECNTYGIIFDETGEVIFDNGLLSEPELLMSGEAR
Ga0335021_0012057_3715_3972	F083931	AGGA	MTNATYTDFPFTVKGINFISRVYSHSEMLKTILSLPAGIFETMNQEAVSEIIGDPSLLTNDELLTELDRVNEGGTHAFILLGENN
Ga0335021_0012057_3972_4088	F026861	GGTGG	MKLHEFQELVKAQRKAQELTNLEKIAKIVSTTKEKENN
Ga0335021_0012057_4088_4285	F014496	AGAAGG	MKTYSIPDLLIGQTYYPRSMARKYQYGEINFAEKREDIYLSEGYEPFAIRFNGNKWATVAVRVAD
Ga0335021_0012057_5006_5173	F015730	AGGA	MLSNKTLEKIVYEYQHGGVKGHHPEISLSERKALLKYLWSLPSKCAPECEATHKN
Ga0335021_0012057_513_743	F000684	N/A	LYFWYFSAKLILRPKQKGKTQMTLGGYTYQVGDLFTTSKTGVTGRIEKFVPMRQNVTKVMLRLANNQTRFAMVKTH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335021_0012057

Overview

Ecosystem & Geography

Associated Families

Sequences