Scaffold Ga0335021_0008440

Overview

Basic Information

• Taxon OID: 3300034023
• Scaffold ID: Ga0335021_0008440
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7279
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027781	Metagenome / Metatranscriptome	193	Y
F080878	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335021_0008440_1027_1941	F027781	AGGAG	MELHKPDHLISLASSAVLVSVDVNVWSATKQDRIISNEVTASKNADKSAGRYVKNLLADHPRHKAIVNYRQTIYNWVKRRTYRWNNSQDLLPSVDMPKFKQEYHAHQQAFNTLLGDFILAYDSIVSDMAFKQGDMFDRNDYPAKEQLVSKFGVQLFVSEVPMSDFRCGIASDIAEDLFATYSQQAQEIVSHVMVEQQSRFIEVMKSISHCCGVDDVGVDDNTGETKTKKRKIYDTTILKAKEMCDTFKGFNLSGDPQLEEARASLERALSGVTAEDIRESDAVRHAVKEDIDDILGKFSSFKCV
Ga0335021_0008440_2949_3194	F080878	AGGAG	MGKVKVQYAPLDFEPARQQQEQAPRSMYLLLCNGKPLALYDHRDTAEYEMHICLQGDMHEGHENKYRIKTMGVVTHSYEDN