NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0002777

Scaffold Ga0335021_0002777


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0002777 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13480
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (88.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001460Metagenome / Metatranscriptome690Y
F009530Metagenome / Metatranscriptome316Y
F047059Metagenome / Metatranscriptome150Y
F050377Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0002777_11911_12087F001460GAGMMLGYEKKDLDTMINSVHDAKLFYLRSPSDLMDKTQLRNDLEMTVSFLQGLWAEGYFD
Ga0335021_0002777_12101_12286F047059AGGMEYLKIHKISLEQDLEDARNNIPLNEDEYFESDAYYTGAIDTMEHILSVATDIMLDNERV
Ga0335021_0002777_13349_13480F050377AGGAMTSTPTTTREYLKTQGISVGKRGRFSAAALGAISKAAQEGVVSQ
Ga0335021_0002777_3034_3207F009530GGAGMTITYSIWQGSKLISIDNVAHDVKAIDNLINALNESELGKSKKFTANVMDIKAVATL
Ga0335021_0002777_8969_9655F000980GGAMSVAWCIILFMTNELISSKYTFACDPEHCDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATITPLTQTKEEKMETTEHLVPDTYNSNLLVTYKKINGYSNPEYITDKVTSIEWDLHNARQSQKTLSSIQSKIDAVKEIICEAYADSQDQDTLRDIAEALGIELIKEVQFTASVEVTGTYSYDVLSDYSEYDLESVITDSLYAESNDGNITIDDTEVCNVREA
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