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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034023 Open in IMG/M |
| Scaffold ID | Ga0335021_0001909 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16197 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (92.31%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000645 | Metagenome / Metatranscriptome | 962 | Y |
| F005878 | Metagenome / Metatranscriptome | 387 | Y |
| F019642 | Metagenome / Metatranscriptome | 228 | Y |
| F099166 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335021_0001909_2961_3152 | F019642 | GGA | MDANTIAGFVASVLGSIALLIAGLRYIIKLENIPLISRLDKLESTLEIALREKVVKGGTKARR |
| Ga0335021_0001909_4717_5304 | F000645 | GGAG | MSNYLDDYVSVQDRLKEFIGDHPDYRIKTHVLEESLTSNCDVYIVKTELYRTEADPVAWTTGLSSEAKSKQYALELAETGSLGRALNLAGYFAKPAGAPKKPIQTLNPKLAEFVKEQRPNDPEPIVWDVSEVAEKLGAEIVDEIPLCSGGDGPMVLKSGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGSWVFQK |
| Ga0335021_0001909_5286_5630 | F005878 | GGA | LGIPEVSLEMHPFKCGQCKKVTAHREIRRYASEINEGQEVWLMECQNCFEMRLIEPVERVASKEDDITRCDQCGNYKMKAAKCRICKLAAGQERVKERYWTGGATLERFLDADI |
| Ga0335021_0001909_6059_6544 | F099166 | AGG | MTIKDLSLKLAAISLLAHQAKKLKDELRAELKVQMDELGADRVKAELGDEVVAYITTTKPKFKWVIKSDRKALEWFKAYYPSEVIETIRPSSLEAILDKFNYQDDVVIDPNGEVVDWLEGSLAEPYLTTKFHGEGRAILRDALIGLKRNELDVKEILELEG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |