NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335021_0000306

Scaffold Ga0335021_0000306


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0000306 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35477
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057207Metagenome / Metatranscriptome136N
F095355Metagenome / Metatranscriptome105N
F097186Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0000306_12811_13374F095355AGGAGMSDDKRIGTADNYAISDAAEAARAAYSYRKTPEYETWLQEVAAWRRCGMDGPQPPAPDLSQGLQEYRYGEPTRRVSVDLWREDLRGLDLRDIPRSTYGATVRDKWRILGTVLPGRDQIELGAFELASVMTRFMLMELGLRRGGDAGDAYNDLVGELYGHALEAAQKMVEHLLTADIESGLKRPTEDA
Ga0335021_0000306_29890_30114F057207N/AMGYYNAPAEVDMTREQWLAASSLLGSDAVLLDYRSPPEVEAVIAAIMDDAAPVDEAPAVPLSAPKVLVSRKRKG
Ga0335021_0000306_9141_9575F097186GGAGGMSDLIVGDKDGRGFDWVSVTLGACLGATITFIVGSQNGEQVGKSIERATVQCIDELGVRNSDSTSACWDMQADALNKMELQRQAIDRLAERCVLSVPLAERLRVTKTRDVKPFKVVIPAPSSNAGSADWDAEDFGPEGDPDGKP
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