Scaffold Ga0335021_0000292

Overview

Basic Information

• Taxon OID: 3300034023
• Scaffold ID: Ga0335021_0000292
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36033
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (72.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023253	Metagenome	211	Y
F038004	Metagenome / Metatranscriptome	167	Y
F079389	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335021_0000292_1605_1790	F038004	GGTGG	MAIRLGATDTHIVLTALWDYRETLTNGIAPTPHIQARIASVDRLIASYRKSFFALDRLGL
Ga0335021_0000292_34618_34896	F079389	N/A	MIQAAKDQGWHLSLTANHYGMHRSSIAAACERFGITLPMHPFSPQRVSPKSKVWIDIADGETKPKVKLSASPAAVERTLRRIQNEKRLQALS
Ga0335021_0000292_808_1026	F023253	GGAGG	MMFWRKEPKTMPHRDIHAEAALGISNAASVLPPKRFMDLVYWAIMTNRQISVEDMDALANRLSRAAWERGRK