Scaffold Ga0335021_0000274

Overview

Basic Information

• Taxon OID: 3300034023
• Scaffold ID: Ga0335021_0000274
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37148
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (81.97%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F011148	Metagenome / Metatranscriptome	294	Y
F058557	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335021_0000274_11569_11913	F058557	AGG	MGIARFENVDVNTLTFAIDSYGSGNTVITKKFTSRPLVSSVRNSVAILEKYRVYSDLIQFKFNYTPWVRDVVINQNLYSFTWNGQDWRVTDAIEANDRMSVTVMCYRSDPATKV
Ga0335021_0000274_36548_37036	F011148	GGA	MAVFNKNSINQVSGFDNPCITGELVYQQKTYWNLTLTAEDGVSPVSLLGATINAQIIRRTLTNVQDSRYGLSFDIGDYTPTPTAIPLTIANRVDATGSFTLIIDDTSWLAVASDPSLAIDSVNGAGFSGRIKISFPANGGTPADDSIIFLLFIVRSDAIIKV
Ga0335021_0000274_42_530	F011148	AGTAGG	MAVFNKNSITQVSGFDNPCITGELVYQQKTFWNLTLTAEDGVSPVSLTGATIDAQIIRRTLTNVQDSRYGLSFDIGDYTPTPTAIPLTIANRNDLAGSFTLLIDDTSWLAVASDPSLAIDSVNGAGFSGRIKISFVATGATPAEDNIIFLLFIVRSDAIIKV
Ga0335021_0000274_4992_5618	F002085	N/A	MESIAPVQNTNNIRLADFVRVTTVVAGITTTYLFSTAPFPITVSAVDANPFSGLSALVKVGEVQRDIKSTANETSLTLVGLDTALLGWVLGQNLKGSKIEMWHGFFNTDNELISTGGTGGLYKFFTGYINAFSVSEQWMEEIRMFVGMINVSAASIQIILQNRTAGRYTNNNSWQFFDSADTSMNRVSFIQTINYFFGKDKDPNAYKT
Ga0335021_0000274_5618_6301	F000934	AGG	MANLNTILSVAESVGINDQRFIGQMVSRNQRISTSEILTVQPFGFEIKPMAYLLYSKNRQLLSALREADKAVEQYLNFGTTGWVNYIAYQGEFTGAQISACNWQADSTNKALVLTDLPAVPSTTYVVRTGDFCQVGRYAYIATEDVLRGVGDTVIIPVHRNLITPLTGLSPCVIGQYGTTIALGGNSYTGITFCVILRDYPTYTLVPMTNDSFISWSGSFKAFEAVL