Scaffold Ga0335021_0000238

Overview

Basic Information

• Taxon OID: 3300034023
• Scaffold ID: Ga0335021_0000238
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39218
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (26.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058094	Metagenome / Metatranscriptome	135	Y
F082584	Metagenome / Metatranscriptome	113	Y
F105025	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335021_0000238_18665_18847	F105025	GAG	MDTHQATASFTGLLATATGLTVSMLPELEAWLRIASLLIGCAVGLASLYAILKNKKHPHE
Ga0335021_0000238_21144_21512	F082584	N/A	MATVLKLLRTTVPGRVPTAAQVAQGSLALNLADRRLFSKDHNNEVFRIARPRDPSDYQLLHAADGNHLYLGRLAWEDYPATGPAEDATAWTIYKISTNSAGDVVAETSAQGAWSSKLSLSYS
Ga0335021_0000238_22451_22723	F058094	N/A	MSQVSFDPLTGNMISTTAQVAQLDSSGQISGTMIPDDFDDVQRFPTLADFPQVGVVARIYFSADNNVPHRWDPDTLSYLPIVADSDGGEF